分子間相互作用解析 ITC的最新趨勢

MicroCal產品的應用經理Verna Frasca使用Google學術搜尋,調查截至2018年6月30日與ITC相關的論文。報告如下。

閱讀此文章的英文版(英語原文)

何謂ITC 〜分子間相互作用解析的黃金標準〜

ITC被譽為蛋白質、核酸、脂質等生物大分子的分子間相互作用解析的黃金標準。其特點不僅在於能求出結合的強度,還能獲得化學計量及熱力學參數。

ITC的歷史 〜世界上首台ITC是MicroCal〜

您知道MicroCal是世界上首台ITC嗎?

時光倒流至1987年。在美國東海岸的北安普敦的MicroCal LLC(現為Malvern Panalytical)從一個名為OMEGA的系統開始銷售。(驚人的是,至今仍有OMEGA在運行!)隨後,1992年推出MCS ITC,1998年推出VP-ITC(至今仍然銷售中!),2007年推出成功縮小容量的iTC200。2004年開發出世界第一台全自動的AutoITC,2008年推出顯著改進版本Auto-iTC200。2015年,進行了硬體及軟體的升級,開始製造、銷售PEAQ-ITC和PEAQ-ITC Automated。

世界各地有數千台ITC被用於生命科學領域的研究機構,以及小分子與生物製藥製造商中。

ITC論文調查 〜ITC使用的論文數量大幅增加〜

使用Google學術搜尋,每5年期間用「MicroCal +(列舉ITC的產品名以“or”連接)」進行搜尋,得到以下結果。

MicroCal ITC使用的論文數量顯著上升。

詳細瀏覽這些論文,可以看到測量了各種分子間相互作用類型。例如,蛋白質-小分子、蛋白質-蛋白質、蛋白質-DNA、抗原-抗體,以及酶和底物等。ITC通常用於評估作為低分子藥物候選物質的化合物和其目標分子(主要是蛋白質)的結合。此外,納米顆粒、聚合物、膜、表面活性劑及膠束等領域的評估也在增加。

這些研究被發表在超過350本出版物,其中自2015年1月到2018年6月底,至少有25篇論據使用了MicroCal ITC的系統,以下為32本這類出版物。(論據數量為四捨五入)

Journal of Biological Chemistry (260); Scientific Reports (225); Nature Communications (135); Biochemistry (125); PloS One (100); Biochimica et Biophysica Acta (BBA) (85); Structure (85); Nucleic Acids Research (80); Proceedings of the National Academy of Sciences (80); International Journal of Biological Macromolecules (70); RSC Advances (70); Journal of Medicinal Chemistry (60); Journal of Molecular Biology (50); The Journal of Physical Chemistry B (50); Elife (45); Langmuir (45); Biochemical and Biophysical Research Communications (40); Nature Chemical Biology (40); ACS Chemical Biology(35); Chemistry-A European Journal (35); Biochemical Journal (30); Biophysical Journal (30); FEBS Letters (30); Journal of the American Chemical Society (30); Molecular Cell (30); Nature (30); Nature Structural and Molecular Biology (30); Protein Science (30); The FEBS Journal (30); ChemBioChem (25); Physical Chemistry Chemical Physics (25); The Journal of Chemical Thermodynamics (25);

雜誌發表的ITC測量案例

以下介紹了發表於各種雜誌上的ITC測量案例。(全部為英文)

Acta parasitological: “Measurement of binding strength between prey proteins interacting with Toxoplasma gondii SAG1 and SAG2 using isothermal titration calorimetry (ITC)

AIDS: “Design of a highly potent HIV-1 fusion inhibitor targeting the gp41 pocket

Allergy: “Characterization of maize chitinase‐A, a tough allergenic molecule

Anesthesiology: “Discovery of a novel general anesthetic chemotype using high-throughput screening”

Antibodies: “Dimerized Domain V of Beta2-Glycoprotein I Is Sufficient to Upregulate Procoagulan Activity in PMA-Treated U937 Monocytes and Require Intact Residues in Two Phospholipid-Binding Loops”

Archives of Toxicology: “Interaction of perfluoroalkyl acids with human liver fatty acid-binding protein”

Bioengineering & Translational Medicine: “Targeting HPV‐infected cervical cancer cells with PEGylated liposomes encapsulating siRNA and the role of siRNA complexation with polyethylenimine

Biomedicine & Pharmacotherapy: “Nanobodies targeting cortactin proline rich, helical and actin binding regions downregulate invadopodium formation and matrix degradation in SCC-61 cancer cells”

Blood: “Structural basis for quinine-dependent antibody binding to platelet integrin αIIbβ3”

Breast Cancer Research: “Gossypol has anti-cancer effects by dual-targeting MDM2 and VEGF in human breast cancer”

Cell Host & Microbe: “Structural conservation despite huge sequence diversity allows EPCR binding by the PfEMP1 family implicated in severe childhood malaria”

Cerebral Cortex: “Cortical layer inversion and deregulation of reelin signaling in the absence of SOCS6 and SOCS7”

Chemical Research in Toxicology: “Identification and Molecular Interaction Studies of Thyroid Hormone Receptor Disruptors among Household Dust Contaminants”

Chemistry Select: “An ITC Study on the Interaction Energy Between Galactomannan Biopolymers and Selected MO2 Nanoparticles in Hydrogels

ChemNanoMat: “The Effect of PEGylation on Multivalent Binding: A Surface Plasmon Resonance and Isothermal Titration Calorimetry Study with Structurally Diverse PEG‐Dendritic GATG Copolymers

Chirality: “Isothermal Titration Calorimetry of Chiral Polymeric Nanoparticles

Clinical and Translational Oncology: “Selection of DNA aptamers for extra cellular domain of human epidermal growth factor receptor 2 to detect HER2 positive carcinomas”

Cogent Biology: “Isolation and purification of phytocystatin from almond: Biochemical, biophysical, and immunological characterization”

Colloid and Polymer Science: “Adsorption of lysozyme on pH-responsive PnBA-b-PAA polymeric nanoparticles: studies by stopped-flow SAXS and ITC”

Extremophiles: “High-affinity RNA binding by a hyperthermophilic single-stranded DNA-binding protein”

Flavour and Fragrance Journal: “Facile separation of cinnamyl acetate and cinnamaldehyde based on host–guest complexation with β‐cyclodextrin

Food Chemistry: “Effect of the addition of mannoproteins on the interaction between wine flavonols and salivary proteins”

Food Research International: “Evaluation of butyrylcholinesterase inhibitory activity by chlorogenic acids and coffee extracts assessed in ITC and docking simulation models”

Journal of Agricultural and Food Chemistry: “Ethanol Concentration Influences the Mechanisms of Wine Tannin Interactions with Poly(l-proline) in Model Wine”

Tuberculosis: “Investigating the inhibitory potential of 2-Aminopurine metal complexes against serine/threonine protein kinases from Mycobacterium tuberculosis”

Water, Air, & Soil Pollution: “Exploring the Effect of Cu2+ on Sludge Hydrolysis and Interaction Mechanism between Cu2+ and Xylanase by Multispectral and Thermodynamic Methods”

2015年以後出版的以下出版物中包含有使用MicroCal ITC的程序章節。

AMPK (Methods in Molecular Biology, volume 1732): “Applications of NMR and ITC for the Study of the Kinetics of Carbohydrate Binding by AMPK β-Subunit Carbohydrate-Binding Modules”

Antimicrobial Peptides (Methods in Molecular Biology, volume 1548): “Calorimetry Methods to Study Membrane Interactions and Perturbations Induced by Antimicrobial Host Defense Peptides”

Applied Biophysics for Drug Discovery: “Thermodynamics in Drug Discovery

Biocalorimetry (Methods, volume 76):

Biocalorimetry: Foundations and Contemporary Approaches

Biochemical Roles of Eukaryotic Cell Surface Macromolecules (Advances in Experimental Medicine and Biology, volume 842): “Biophysical Characterization of the Interaction of O-acylcholines with the Major Bovine Seminal Plasma Protein, PDC-109”

c-Di-GMP Signaling (Methods in Molecular Biology, volume 1657): “Isothermal Titration Calorimetry to Determine Apparent Dissociation Constants (Kd) and Stoichiometry of Interaction (n) of C-di-GMP Binding Proteins”

Calorimetry (Methods in Enzymology, volume 567)

Current Protocols in Nucleic Acid Chemistry: “Calorimetry of Nucleic Acids

Excipient Applications in Formulation Design and Drug Delivery: “Drug Excipient interactions”

Galectins: “Probing lectin–mucin interactions by isothermal titration microcalorimetry” https://link.springer.com/protocol/10.1007/978-1-4939-1396-1_5

Glycosaminoglycans: “Using Isothermal Titration Calorimetry to Determine Thermodynamic Parameters of Protein–Glycosaminoglycan Interaction”

In Vitro Mutagenesis (Methods in Molecular Biology, volume 1498): “Biochemical and Biophysical Methods to Examine the Effects of Site-Directed Mutagenesis on Enzymatic Activities and Interprotein Interactions”

Molecular Physiology and Ecophysiology of Sulfur: “Investigation of Protein-Protein Interactions of Ferredoxin and Sulfite Reductase Under Different Sodium Chloride Concentrations by NMR Spectroscopy and Isothermal Titration Calorimetry”

Nucleic Acid Aptamers  (Methods in Molecular Biology, volume 1380): “Label-free determination of the dissociation constant of small molecule-aptamer interaction by isothermal titration calorimetry”

Nucleic Acid Crystallography (Methods in Molecular Biology, volume 1320): “Isothermal Titration Calorimetry: Assisted Crystallization of RNA–Ligand Complexes”

Polymer Micelles: “Micellization Thermodynamics of Pluronic P123 (EO20PO70EO20) Amphiphilic Block Copolymer in Aqueous Ethylammonium Nitrate (EAN) Solutions”

Potassium Channels (Methods in Molecular Biology, volume 1684): “Ion Binding to Transport Proteins using Isothermal Titration Calorimetry”

Semaphorin Signaling Methods (Methods in Molecular Biology, volume 1493): “Characterizing Plexin GTPase Interactions Using Gel Filtration, Surface Plasmon Resonance Spectrometry, and Isothermal Titration Calorimetry”

SH2 Domains (Methods in Molecular Biology, volume 1555): “Calorimetric measurement of SH2 domain ligand affinities”

Thermodynamics and Kinetics of Drug Binding: “Thermodynamic Profiling of Carbonic Anhydrase Inhibitors

Vitamin C: “Encapsulation of Vitamin C into β‐Cyclodextrin for Advanced and Regulatory Release”

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